Cambridge Epigenetix (@CEGX_news) have a list of almost 50 papers on their website using their technology for DNA methylation and hydroxymethylation analysis, which I thought readers of CoreGenomics might be interested in. They also have a list of Epigenetics Conferences coming up….enjoy!

The papers:

• Chen et al. Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine. BMC Genomics. 2017; 18:96
• Yotova et al. Epigenetic Alterations Affecting Transcription Factors and Signaling Pathways in Stromal Cells of Endometriosis. PLOS One. 2017 e0170859
• Gross et al. Variations in 5-methylcytosine and 5-hydroxymethylcytosine among human brain, blood, and saliva using oxBS and the Infinium MethylationEPIC array Biology Methods and Protocols 1 (1) 2016
• Solvsten et al. Voluntary Physical Exercise Induces Expression and Epigenetic Remodeling of VegfA in the Rat Hippocampus Molecular Neurobiology 1-16. 2016
• Johnson et al. 5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients Nature Communications. 7, Article number: 13177. 2016
• Wallner et al. Epigenetic dynamics of monocyte-to-macrophage differentiation. Epigenetics & Chromatin. 2016; 9:33. 
• Vento-Tomo DNA demethylation of inflammasome-associated genes is enhanced in patients with cryopyrin-associated periodic syndromes Journal of Allergy and Clinical Immunology 139 (1) 2017
• Green et al. Hydroxymethylation is uniquely distributed within term placenta, and is associated with gene expression. FASEB J. 2016.
• Houseman et al. OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA. Bioinformatics, 2016, 1-3.
• Hadad et al. Absence of genomic hypomethylation or regulation of cytosine-modifying enzymes with aging in male and female mice. Epigenetics & Chromatin. 2016; 9:30
• Toraño et al. Age-associated hydroxymethylation in human bone-marrow mesechymal stem cells. J. Transl Med. 2016; 14:207
• Lunnon et al. Variation in 5-hydroxymethylcytosine across human cortex and cerebellum. Genome Biol. 2016; 17:27
• Heyn et al. Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer. Genome Biol. 2016; 17:11
• Yue et al. Control of Foxp3 stability through modulation of TET activity. J Exp Med 2016; Vol 213 (3) 377-397
• Vento-Tormo et al. IL-4 orchestrates STAT6-mediated DNA demethylation leading to dentritic cell differentiation.Genome Bioloy 2016; 17:4
• Wille et al. 5-hydroxymethylation of the EBV genome regulates the latent to lytic switch. PNAS 2015
• Page et al. Hepatic Stellate Cell Transdifferentiation Involves Genome-Wide Remodeling of the DNA Methylation Landscape. Journal of Hepatology 2015
• Moran et al. Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences. Epigenomics 2015
• Mendioroz et al. Trans effect of chromosome aneuploidies on DNA methylation patterns in human Down syndrome and mouse models. Genome Biology 2015, 16:263
• Sellars et al. Regulation of DNA methylation dictates Cd4 expression during the development of helper and cytotoxic T cell lineages. Nature immunology (July 2015)
• Yang et al. Hydrogen sulphide promotes Tet1- and Tet2-mediated Foxp3 demethylation to drive regulatory T cell differentiation and maintain immune homeostasis. Immunity 43, 251-263 (2015)
• Kubo N et al. DNA methylation and gene expression dynamics during spermatogonial stem cell differentiation in the early postnatal mouse testis. BMC Genomics. (2015)16:624
• Matsubara et al. Exploration of hydroxymethylation in Kagami-Ogata syndrome caused by hypermethylation of imprinting control regions. Clinical Epigenetics. (2015)7:90
• Feng J et al. Role of Tet1 and 5-hydroxymethylcytosine in cocaine action. Nature Neuroscience. 2015 Apr;18(4):536-44
• Field SF et al. Accurate Measurement of 5-Methylcytosine and 5-Hydroxymethylcytosine in Human Cerebellum DNA by Oxidative Bisulfite on an Array (OxBS-Array). PLoS One. 2015 Feb 23;10(2):e0118202
• Stewart S et al. oxBS:-450K: A method for analysing hydroxymethylation using 450K Bead Chips. Methods. 2014 Aug 28
• Booth MJ et al. Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution. Nature Chemistry. 2014 Mar 23
• Sun D et al. MOABS: model based analysis of bisulfite sequencing data. Genome Biology. 2014 Feb 24; ;15(2):R38
• Liu Y et al. Base-Resolution Maps of 5-Methylcytosine and 5-Hydroxymethylcytosine in Dahl S Rats: Effect of Salt and Genomic Sequence. Hypertension. 2014 Jan 13
• Jeong M et al. Large conserved domains of low DNA methylation maintained by Dnmt3a. Nat Genet. 2013 Nov 24
• Booth MJ et al. Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine. Nat Protoc. 2013 Oct;8(10):1841-51.
• Ficz G et al. FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency. Cell Stem Cell. 2013 Sep 5;13(3):351-9.
• Nakashima H et al. Effects of dppa3 on DNA methylation dynamics during primordial germ cell development in mice. Biol Reprod. 2013 May 23;88(5):125.
• Booth MJ et al. Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science. 2012 May 18;336(6083):934-7.